List of all items
Structs
- DnaBytes
- DnaSlice
- EdgeMap
- EdgeMult
- Exts
- KLowestQualityIter
- KmerDataItem
- KmerExtsIter
- KmerIter
- Label
- MerIter
- QualityBins
- QualityVec
- SingleDirEdgeMap
- SingleDirEdgeMult
- Tags
- TagsCountsFormatter
- TagsFormatter
- TagsIterator
- clean_graph::CleanGraph
- colors::Colors
- compression::CheckCompress
- compression::ScmapCompress
- compression::SimpleCompress
- dna_string::AmbiguousBasesError
- dna_string::DnaString
- dna_string::DnaStringIter
- dna_string::DnaStringSlice
- dna_string::PackedDnaStringSet
- fastq::FastqReader
- fastq::FastqSequenceIterator
- graph::BaseGraph
- graph::DebruijnGraph
- graph::EdgeIter
- graph::IterComponents
- graph::Node
- graph::NodeIntoIter
- graph::NodeIter
- graph::NodeKmer
- graph::NodeKmerIter
- graph::PathCompIter
- kmer::IntKmer
- kmer::K10
- kmer::K11
- kmer::K12
- kmer::K13
- kmer::K14
- kmer::K15
- kmer::K17
- kmer::K18
- kmer::K19
- kmer::K2
- kmer::K20
- kmer::K21
- kmer::K22
- kmer::K23
- kmer::K24
- kmer::K25
- kmer::K26
- kmer::K27
- kmer::K28
- kmer::K29
- kmer::K3
- kmer::K30
- kmer::K31
- kmer::K33
- kmer::K34
- kmer::K35
- kmer::K36
- kmer::K37
- kmer::K38
- kmer::K39
- kmer::K4
- kmer::K40
- kmer::K41
- kmer::K42
- kmer::K43
- kmer::K44
- kmer::K45
- kmer::K46
- kmer::K47
- kmer::K48
- kmer::K49
- kmer::K5
- kmer::K50
- kmer::K51
- kmer::K52
- kmer::K53
- kmer::K54
- kmer::K55
- kmer::K56
- kmer::K57
- kmer::K58
- kmer::K59
- kmer::K6
- kmer::K60
- kmer::K61
- kmer::K62
- kmer::K63
- kmer::K7
- kmer::K9
- kmer::VarIntKmer
- msp::MspInterval
- msp::MspIntervalP
- msp::Scanner
- neighbors::KmerOneHammingIter
- reads::PairedRead
- reads::Read
- reads::Reads
- reads::ReadsIter
- serde::SerGraph
- serde::SerKmers
- serde::SerReads
- summarizer::GroupCountData
- summarizer::IDData
- summarizer::IDEMData
- summarizer::IDMapEMData
- summarizer::IDMapEMQualityData
- summarizer::IDSumData
- summarizer::IDTag
- summarizer::IDTagsCountsData
- summarizer::IDTagsCountsPEMData
- summarizer::MapEMEmapQualityData
- summarizer::RelCountData
- summarizer::SampleInfo
- summarizer::SumMapEMQualityData
- summarizer::SummaryConfig
- summarizer::TagVecData
- summarizer::TagsCountsData
- summarizer::TagsCountsEMData
- summarizer::TagsCountsPData
- summarizer::TagsCountsPEMData
- summarizer::TagsCountsPEMQualityData
- summarizer::TagsCountsSumData
- summarizer::TagsData
- summarizer::TagsSumData
- summarizer::Translator
- vmer::Lmer
Enums
- BaseQuality
- Dir
- colors::ColorMode
- graph::LadderState
- reads::ReadDatas
- reads::ReadsPaired
- reads::Strandedness
- summarizer::GroupFrac
- summarizer::StatTest
- summarizer::Summarizers
Traits
- Kmer
- Mer
- MerImmut
- Vmer
- colors::CFilter
- compression::CompressionSpec
- kmer::IntHelp
- kmer::KmerSize
- reads::ReadData
- summarizer::SummaryData
- vmer::Array
Functions
- base_to_bits
- base_to_bits_checked
- bits_to_ascii
- bits_to_base
- build_test_graph
- colors::get_min_max
- complement
- compression::compress_graph
- compression::compress_kmers
- compression::compress_kmers_no_exts
- compression::compress_kmers_with_hash
- compression::rebuild_uncompressed_graph
- compression::uncompressed_graph
- dna_only_base_to_bits
- dna_string::ndiffs
- filter::bucket
- filter::filter_kmers
- filter::filter_kmers_parallel
- filter::remove_censored_exts
- filter::remove_censored_exts_sharded
- is_valid_base
- msp::msp_sequence
- msp::simple_scan
- size_aligned
- summarizer::round_digits
Type Aliases
- kmer::Kmer10
- kmer::Kmer11
- kmer::Kmer12
- kmer::Kmer13
- kmer::Kmer14
- kmer::Kmer15
- kmer::Kmer16
- kmer::Kmer17
- kmer::Kmer18
- kmer::Kmer19
- kmer::Kmer2
- kmer::Kmer20
- kmer::Kmer21
- kmer::Kmer22
- kmer::Kmer23
- kmer::Kmer24
- kmer::Kmer25
- kmer::Kmer26
- kmer::Kmer27
- kmer::Kmer28
- kmer::Kmer29
- kmer::Kmer3
- kmer::Kmer30
- kmer::Kmer31
- kmer::Kmer32
- kmer::Kmer33
- kmer::Kmer34
- kmer::Kmer35
- kmer::Kmer36
- kmer::Kmer37
- kmer::Kmer38
- kmer::Kmer39
- kmer::Kmer4
- kmer::Kmer40
- kmer::Kmer41
- kmer::Kmer42
- kmer::Kmer43
- kmer::Kmer44
- kmer::Kmer45
- kmer::Kmer46
- kmer::Kmer47
- kmer::Kmer48
- kmer::Kmer49
- kmer::Kmer5
- kmer::Kmer50
- kmer::Kmer51
- kmer::Kmer52
- kmer::Kmer53
- kmer::Kmer54
- kmer::Kmer55
- kmer::Kmer56
- kmer::Kmer57
- kmer::Kmer58
- kmer::Kmer59
- kmer::Kmer6
- kmer::Kmer60
- kmer::Kmer61
- kmer::Kmer62
- kmer::Kmer63
- kmer::Kmer64
- kmer::Kmer7
- kmer::Kmer8
- kmer::Kmer9
- summarizer::ID
- summarizer::Marker
- summarizer::Tag
- vmer::Lmer1
- vmer::Lmer2
- vmer::Lmer3