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SerGraph

debruijn::serde

Struct SerGraph 

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pub struct SerGraph<K: Hash, SD> { /* private fields */ }
Expand description

serialize a SerGraph together with its hashed tags and IDs and a config

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impl<K: Kmer, SD> SerGraph<K, SD>

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pub fn new<DI>( graph: DebruijnGraph<K, SD>, translator: Translator, config: SummaryConfig, ) -> SerGraph<K, SD>
where SD: SummaryData<DI>,

make a new SerGraph

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pub fn serialize<P: AsRef<Path>>(&self, path: P)
where K: Serialize, SD: Serialize,

serialize a SerGraph

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pub fn deserialize_from<P: AsRef<Path> + Debug, DI>(path: P) -> SerGraph<K, SD>
where K: DeserializeOwned, SD: DeserializeOwned + SummaryData<DI>,

deserialize a SerGraph

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pub fn graph(&self) -> &DebruijnGraph<K, SD>

get a reference of the underlying DebruijnGraph<K, SD>

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pub fn translator(&self) -> &Translator

get a reference of the underlying translator (hashed tags and IDs)

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pub fn config(&self) -> &SummaryConfig

get a reference of the underlying SummaryConfig

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pub fn parameters(&self) -> (usize, Summarizers)

get the set parameters (k, summarizer) of the SerGraph

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pub fn dissolve(self) -> (DebruijnGraph<K, SD>, Translator, SummaryConfig)

get the underlying graph, hashed tags, hashed labels and config

Trait Implementations§

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impl<K: Debug + Hash, SD: Debug> Debug for SerGraph<K, SD>

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fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more
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impl<'de, K, SD> Deserialize<'de> for SerGraph<K, SD>
where K: Deserialize<'de> + Hash, SD: Deserialize<'de>,

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fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>
where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer. Read more
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impl<K, SD> Serialize for SerGraph<K, SD>
where K: Serialize + Hash, SD: Serialize,

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fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>
where __S: Serializer,

Serialize this value into the given Serde serializer. Read more

Auto Trait Implementations§

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impl<K, SD> Freeze for SerGraph<K, SD>

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impl<K, SD> RefUnwindSafe for SerGraph<K, SD>
where K: RefUnwindSafe, SD: RefUnwindSafe,

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impl<K, SD> Send for SerGraph<K, SD>
where K: Send, SD: Send,

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impl<K, SD> Sync for SerGraph<K, SD>
where K: Sync, SD: Sync,

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impl<K, SD> Unpin for SerGraph<K, SD>
where K: Unpin, SD: Unpin,

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impl<K, SD> UnsafeUnpin for SerGraph<K, SD>

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impl<K, SD> UnwindSafe for SerGraph<K, SD>
where K: UnwindSafe, SD: UnwindSafe,

Blanket Implementations§

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impl<T> Any for T
where T: 'static + ?Sized,

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fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more
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impl<T> Borrow<T> for T
where T: ?Sized,

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fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more
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impl<T> BorrowMut<T> for T
where T: ?Sized,

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fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more
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impl<T> From<T> for T

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fn from(t: T) -> T

Returns the argument unchanged.

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impl<T, U> Into<U> for T
where U: From<T>,

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fn into(self) -> U

Calls U::from(self).

That is, this conversion is whatever the implementation of From<T> for U chooses to do.

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impl<T> IntoEither for T

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fn into_either(self, into_left: bool) -> Either<Self, Self>

Converts self into a Left variant of Either<Self, Self> if into_left is true. Converts self into a Right variant of Either<Self, Self> otherwise. Read more
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fn into_either_with<F>(self, into_left: F) -> Either<Self, Self>
where F: FnOnce(&Self) -> bool,

Converts self into a Left variant of Either<Self, Self> if into_left(&self) returns true. Converts self into a Right variant of Either<Self, Self> otherwise. Read more
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impl<T> Pointable for T

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const ALIGN: usize

The alignment of pointer.
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type Init = T

The type for initializers.
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unsafe fn init(init: <T as Pointable>::Init) -> usize

Initializes a with the given initializer. Read more
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unsafe fn deref<'a>(ptr: usize) -> &'a T

Dereferences the given pointer. Read more
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unsafe fn deref_mut<'a>(ptr: usize) -> &'a mut T

Mutably dereferences the given pointer. Read more
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unsafe fn drop(ptr: usize)

Drops the object pointed to by the given pointer. Read more
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impl<T> Same for T

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type Output = T

Should always be Self
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impl<SS, SP> SupersetOf<SS> for SP
where SS: SubsetOf<SP>,

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fn to_subset(&self) -> Option<SS>

The inverse inclusion map: attempts to construct self from the equivalent element of its superset. Read more
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fn is_in_subset(&self) -> bool

Checks if self is actually part of its subset T (and can be converted to it).
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fn to_subset_unchecked(&self) -> SS

Use with care! Same as self.to_subset but without any property checks. Always succeeds.
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fn from_subset(element: &SS) -> SP

The inclusion map: converts self to the equivalent element of its superset.
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impl<T, U> TryFrom<U> for T
where U: Into<T>,

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type Error = Infallible

The type returned in the event of a conversion error.
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fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>

Performs the conversion.
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impl<T, U> TryInto<U> for T
where U: TryFrom<T>,

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type Error = <U as TryFrom<T>>::Error

The type returned in the event of a conversion error.
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fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

Performs the conversion.
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impl<V, T> VZip<V> for T
where V: MultiLane<T>,

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fn vzip(self) -> V

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impl<ST, DT> CastableFrom<ST, Initialized, Initialized> for DT
where ST: ?Sized, DT: ?Sized,

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impl<ST, DT> CastableFrom<ST, Uninit, Uninit> for DT
where ST: ?Sized, DT: ?Sized,

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impl<T> DeserializeOwned for T
where T: for<'de> Deserialize<'de>,

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impl<T> Read<Exclusive, BecauseExclusive> for T
where T: ?Sized,