Struct Exts 

pub struct Exts {
    pub val: u8,
}

Store single-base extensions for a DNA Debruijn graph.

8 bits, 4 higher order ones represent extensions to the right, 4 lower order ones represent extensions to the left. For each direction the bits (from lower order to higher order) represent whether there exists an extension with each of the letters A, C, G, T. So overall the bits are: right left T G C A T G C A

Fields

val: u8

Implementations

impl Exts

pub fn new(val: u8) -> Self

pub fn empty() -> Exts

pub fn from_single_dirs(left: Exts, right: Exts) -> Exts

pub fn merge(left: Exts, right: Exts) -> Exts

pub fn add(&self, v: Exts) -> Exts

pub fn subtract(&self, v: Exts) -> Exts

subtract an Exts from an Exts

pub fn set(&self, dir: Dir, pos: u8) -> Exts

pub fn remove(&self, dir: Dir, pos: u8) -> Exts

pub fn get(&self, dir: Dir) -> Vec<u8>

pub fn has_ext(&self, dir: Dir, base: u8) -> bool

pub fn from_slice_bounds(src: &[u8], start: usize, length: usize) -> Exts

pub fn from_dna_string(src: &DnaString, start: usize, length: usize) -> Exts

pub fn num_exts_l(&self) -> u8

pub fn num_exts_r(&self) -> u8

pub fn num_ext_dir(&self, dir: Dir) -> u8

pub fn mk_left(base: u8) -> Exts

pub fn mk_right(base: u8) -> Exts

pub fn mk(left_base: u8, right_base: u8) -> Exts

pub fn get_unique_extension(&self, dir: Dir) -> Option<u8>

pub fn single_dir(&self, dir: Dir) -> Exts

pub fn complement(&self) -> Exts

Complement the extension bases for each direction

pub fn reverse(&self) -> Exts

pub fn rc(&self) -> Exts

Trait Implementations

impl Clone for Exts

fn clone(&self) -> Exts

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Exts

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<'de> Deserialize<'de> for Exts

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Hash for Exts

fn hash<__H: Hasher>(&self, state: &mut __H)

Feeds this value into the given Hasher.

fn hash_slice<H>(data: &[Self], state: &mut H)

where H: Hasher, Self: Sized,

Feeds a slice of this type into the given Hasher.

impl Ord for Exts

fn cmp(&self, other: &Exts) -> Ordering

This method returns an Ordering between self and other.

fn max(self, other: Self) -> Self

where Self: Sized,

Compares and returns the maximum of two values.

fn min(self, other: Self) -> Self

where Self: Sized,

Compares and returns the minimum of two values.

fn clamp(self, min: Self, max: Self) -> Self

where Self: Sized,

Restrict a value to a certain interval.

impl PartialEq for Exts

fn eq(&self, other: &Exts) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl PartialOrd for Exts

fn partial_cmp(&self, other: &Exts) -> Option<Ordering>

This method returns an ordering between self and other values if one exists.

fn lt(&self, other: &Rhs) -> bool

Tests less than (for self and other) and is used by the < operator.

fn le(&self, other: &Rhs) -> bool

Tests less than or equal to (for self and other) and is used by the <= operator.

fn gt(&self, other: &Rhs) -> bool

Tests greater than (for self and other) and is used by the > operator.

fn ge(&self, other: &Rhs) -> bool

Tests greater than or equal to (for self and other) and is used by the >= operator.

impl Serialize for Exts

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.

impl Copy for Exts

impl Eq for Exts

impl StructuralPartialEq for Exts