Trait Vmer 

pub trait Vmer:
    Mer
    + PartialEq
    + Eq {
    // Required methods
    fn new(len: usize) -> Self;
    fn max_len() -> usize;
    fn get_kmer<K: Kmer>(&self, pos: usize) -> K;

    // Provided methods
    fn from_slice(seq: &[u8]) -> Self { ... }
    fn first_kmer<K: Kmer>(&self) -> K { ... }
    fn last_kmer<K: Kmer>(&self) -> K { ... }
    fn both_term_kmer<K: Kmer>(&self) -> (K, K) { ... }
    fn term_kmer<K: Kmer>(&self, dir: Dir) -> K { ... }
    fn iter_kmers<K: Kmer>(&self) -> KmerIter<'_, K, Self>  { ... }
    fn iter_kmer_exts<K: Kmer>(
        &self,
        seq_exts: Exts,
    ) -> KmerExtsIter<'_, K, Self>  { ... }
}

A DNA sequence with run-time variable length, up to a statically known maximum length

Required Methods

fn new(len: usize) -> Self

Create a new sequence with length len, initialized to all A’s

fn max_len() -> usize

Maximum sequence length that can be stored in this type

fn get_kmer<K: Kmer>(&self, pos: usize) -> K

Efficiently extract a Kmer from the sequence

Provided Methods

fn from_slice(seq: &[u8]) -> Self

Create a Vmer from a sequence of bytes

fn first_kmer<K: Kmer>(&self) -> K

Get the first Kmer from the sequence

fn last_kmer<K: Kmer>(&self) -> K

Get the last kmer in the sequence

fn both_term_kmer<K: Kmer>(&self) -> (K, K)

Get the terminal kmer of the sequence, on the both side of the sequence

fn term_kmer<K: Kmer>(&self, dir: Dir) -> K

Get the terminal kmer of the sequence, on the side of the sequence given by dir

fn iter_kmers<K: Kmer>(&self) -> KmerIter<'_, K, Self>

Iterate over the kmers in the sequence

fn iter_kmer_exts<K: Kmer>(&self, seq_exts: Exts) -> KmerExtsIter<'_, K, Self>

Iterate over the kmers and their extensions, given the extensions of the whole sequence

Dyn Compatibility

This trait is not dyn compatible.

In older versions of Rust, dyn compatibility was called "object safety", so this trait is not object safe.

Implementors

impl Vmer for DnaString

impl Vmer for DnaStringSlice<'_>

impl Vmer for DnaBytes

impl Vmer for DnaSlice<'_>

impl<A: Array<Item = u64> + Copy + Eq + Ord + Hash> Vmer for Lmer<A>