Struct EdgeMult 

pub struct EdgeMult { /* private fields */ }

multiplicities or coverage for each of the 8 possible edges indices: 0: T right 1: G right 2: C right 3: A right 4: T left 5: G left 6: C left 7: A left

Implementations

impl EdgeMult

pub fn new() -> Self

a new, empty EdgeMult

pub fn new_from(edge_mults: [u32; 8]) -> Self

a new EdgeMult with values

pub fn add(&mut self, base: u8, dir: Dir, count: u32)

add a count to the an edge

pub fn remove(&mut self, base: u8, dir: Dir)

remove an edge from the EdgeMult

pub fn add_exts(&mut self, exts: Exts)

add an Exts to the EdgeMult

pub fn edge_mults(&self) -> [u32; 8]

get the edge multiplicities as an array

pub fn right(&self) -> &[u32]

get the edge multiplicities to the right of the node

pub fn left(&self) -> &[u32]

get the edge multiplicities to the left of the node

pub fn sum(&self) -> u32

get the sum of all edges of the node

pub fn edge_mult(&self, base: u8, dir: Dir) -> u32

get the multiplicity of a certain edge

pub fn exts(&self) -> Exts

get the Exts corresponding to the EdgeMult

pub fn clean_edges(&mut self, exts: Exts)

clean the edge mults by removing edge counts that led to filtered kmers based on a correct Exts

pub fn rc(&mut self)

pub fn combine(left: &EdgeMult, right: &EdgeMult) -> EdgeMult

pub fn from_single_dirs( left: &Option<SingleDirEdgeMult>, right: &Option<SingleDirEdgeMult>, ) -> Option<EdgeMult>

pub fn single_dir(&self, dir: Dir) -> SingleDirEdgeMult

Trait Implementations

impl Clone for EdgeMult

fn clone(&self) -> EdgeMult

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for EdgeMult

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for EdgeMult

fn default() -> Self

Returns the “default value” for a type.

impl<'de> Deserialize<'de> for EdgeMult

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Display for EdgeMult

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Ord for EdgeMult

fn cmp(&self, other: &EdgeMult) -> Ordering

This method returns an Ordering between self and other.

fn max(self, other: Self) -> Self

where Self: Sized,

Compares and returns the maximum of two values.

fn min(self, other: Self) -> Self

where Self: Sized,

Compares and returns the minimum of two values.

fn clamp(self, min: Self, max: Self) -> Self

where Self: Sized,

Restrict a value to a certain interval.

impl PartialEq for EdgeMult

fn eq(&self, other: &EdgeMult) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl PartialOrd for EdgeMult

fn partial_cmp(&self, other: &EdgeMult) -> Option<Ordering>

This method returns an ordering between self and other values if one exists.

fn lt(&self, other: &Rhs) -> bool

Tests less than (for self and other) and is used by the < operator.

fn le(&self, other: &Rhs) -> bool

Tests less than or equal to (for self and other) and is used by the <= operator.

fn gt(&self, other: &Rhs) -> bool

Tests greater than (for self and other) and is used by the > operator.

fn ge(&self, other: &Rhs) -> bool

Tests greater than or equal to (for self and other) and is used by the >= operator.

impl Serialize for EdgeMult

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.

impl Eq for EdgeMult

impl StructuralPartialEq for EdgeMult