Struct EdgeMap 

pub struct EdgeMap { /* private fields */ }

mapped transcript/gene/chromosome IDs for each of the 8 possible edges indices: 0: T right 1: G right 2: C right 3: A right 4: T left 5: G left 6: C left 7: A left

Implementations

impl EdgeMap

pub fn new(edge_maps: [Box<[ID]>; 8]) -> EdgeMap

create a new EdgeMap by supplying the underlying mapped IDs.

pub fn add_id(&mut self, exts: Exts, id: ID)

add an ID at an Exts to the EdgeMap

pub fn is_empty(&self) -> bool

returns true if the EdgeMap does not contain any IDs

pub fn mem_heap(&self) -> usize

returns the heap memory used by the EdgeMap - the stack memory size is always 128 bytes (8 edges * (8 byte pointer + 8 byte length))

pub fn from_single_dirs( left: &Option<SingleDirEdgeMap>, right: &Option<SingleDirEdgeMap>, ) -> Option<EdgeMap>

create an EdgeMap from two SingleDirEdgeMaps

pub fn single_dir(&self, dir: Dir) -> SingleDirEdgeMap

get the SingleDirEdgeMap in the specified Dir

pub fn clean_edges(&mut self, exts: Exts)

clean the edge maps by removing IDs mapped to edges that led to filtered kmers, based on a correct Exts

Trait Implementations

impl Clone for EdgeMap

fn clone(&self) -> EdgeMap

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for EdgeMap

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for EdgeMap

fn default() -> Self

Returns the “default value” for a type.

impl<'de> Deserialize<'de> for EdgeMap

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Display for EdgeMap

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Ord for EdgeMap

fn cmp(&self, other: &EdgeMap) -> Ordering

This method returns an Ordering between self and other.

fn max(self, other: Self) -> Self

where Self: Sized,

Compares and returns the maximum of two values.

fn min(self, other: Self) -> Self

where Self: Sized,

Compares and returns the minimum of two values.

fn clamp(self, min: Self, max: Self) -> Self

where Self: Sized,

Restrict a value to a certain interval.

impl PartialEq for EdgeMap

fn eq(&self, other: &EdgeMap) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl PartialOrd for EdgeMap

fn partial_cmp(&self, other: &EdgeMap) -> Option<Ordering>

This method returns an ordering between self and other values if one exists.

fn lt(&self, other: &Rhs) -> bool

Tests less than (for self and other) and is used by the < operator.

fn le(&self, other: &Rhs) -> bool

Tests less than or equal to (for self and other) and is used by the <= operator.

fn gt(&self, other: &Rhs) -> bool

Tests greater than (for self and other) and is used by the > operator.

fn ge(&self, other: &Rhs) -> bool

Tests greater than or equal to (for self and other) and is used by the >= operator.

impl Serialize for EdgeMap

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.

impl Eq for EdgeMap

impl StructuralPartialEq for EdgeMap