Struct SampleInfo 

pub struct SampleInfo { /* private fields */ }

contains information about the samples required for graph construction

Example:

• Sample IDs in group 1: 0, 1, 2
• Sample IDs in group 2: 3, 4, 5, 6

use debruijn::summarizer::{SampleInfo, Marker};
 
let marker0: Marker = 0b0000111; // = 7
let marker1: Marker = 0b1111000; // = 120
 
let sample_kmers = vec![1232, 12323, 24342, 24234, 345456, 21234, 546456];
assert_eq!(marker0.count_ones() + marker1.count_ones(), sample_kmers.len() as u32);
 
let sample_info = SampleInfo::new(marker0, marker1, sample_kmers);
 

Implementations

impl SampleInfo

pub fn new(marker0: Marker, marker1: Marker, sample_kmers: Vec<u64>) -> Self

make a new SampleInfo

Arguments

• marker0: a [M] which binary-encodes the affiliation of the tags to a group
• marker1: same as marker0, for a second group
• sample_kmers: a Vec<u64> containing numbers of non-unique k-mers for each sample at the index of the sample-id

pub fn empty() -> Self

make a new, empty SampleInfo

pub fn get_markers(&self) -> (Marker, Marker)

get the binary encoded group affiliation of tags

Trait Implementations

impl Clone for SampleInfo

fn clone(&self) -> SampleInfo

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for SampleInfo

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<'de> Deserialize<'de> for SampleInfo

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Ord for SampleInfo

fn cmp(&self, other: &SampleInfo) -> Ordering

This method returns an Ordering between self and other.

fn max(self, other: Self) -> Self

where Self: Sized,

Compares and returns the maximum of two values.

fn min(self, other: Self) -> Self

where Self: Sized,

Compares and returns the minimum of two values.

fn clamp(self, min: Self, max: Self) -> Self

where Self: Sized,

Restrict a value to a certain interval.

impl PartialEq for SampleInfo

fn eq(&self, other: &SampleInfo) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl PartialOrd for SampleInfo

fn partial_cmp(&self, other: &SampleInfo) -> Option<Ordering>

This method returns an ordering between self and other values if one exists.

fn lt(&self, other: &Rhs) -> bool

Tests less than (for self and other) and is used by the < operator.

fn le(&self, other: &Rhs) -> bool

Tests less than or equal to (for self and other) and is used by the <= operator.

fn gt(&self, other: &Rhs) -> bool

Tests greater than (for self and other) and is used by the > operator.

fn ge(&self, other: &Rhs) -> bool

Tests greater than or equal to (for self and other) and is used by the >= operator.

impl Serialize for SampleInfo

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.

impl Eq for SampleInfo

impl StructuralPartialEq for SampleInfo