Skip to main content Module summarizer Copy item path Source GroupCountData Implementation of SummaryData<Tag> IDData the IDs the k-mer was observed with and its number of observations
ID could be gene-, read-, or orthogroup-ID IDEMData Implementation of SummaryData<Tag> IDMapEMData Implementation of SummaryData<Tag> IDMapEMQualityData Implementation of SummaryData<Tag> IDSumData the IDs the k-mer was observed with and its number of observations
ID could be gene-, read-, or orthogroup-ID IDTag type for IDs and tags together IDTagsCountsData Implementation of SummaryData<IDTag> IDTagsCountsPEMData Implementation of SummaryData<Tag> MapEMEmapQualityData Implementation of SummaryData<Tag> RelCountData Implementation of SummaryData<Tag> SampleInfo contains information about the samples required for graph construction SumMapEMQualityData Implementation of SummaryData<Tag> SummaryConfig Configuration for summary processes. It it used to filter the k-mers during
and after graph construction and to make statistical analyses based on k-mer
occurrence in the sample groups. TagVecData the samples the k-mer was observed with, stored in a Vec -
unlike TagsData TagsCountsData Implementation of SummaryData<Tag> TagsCountsEMData Implementation of SummaryData<Tag> TagsCountsPData Implementation of SummaryData<Tag> TagsCountsPEMData Implementation of SummaryData<Tag> TagsCountsPEMQualityData Contains the tags the k-mer was observed with, how many times it
was observed with each label, a p-value, and the edge multiplicites/coverage TagsCountsSumData Implementation of SummaryData<Tag> TagsData the tags the k-mer was observed with TagsSumData the tags the k-mer was observed with and its number of observations Translator translate tags and IDs (e.g. into sample labels and gene names) GroupFrac In how many of the two sample groups does a specified percentage of the samples
have to be present StatTest Statistical test for calculation of p-values Summarizers SummaryData Trait for summarizing k-mers, determines the data saved in the graph nodes round_digits round an unsigned integer to the specified amount of digits,
if the integer is shorter than the number if digits, it returns the original integer ID type for IDs (e.g. gene IDs) Marker inner type for Tags Tag type for tags